4.98 from 38 votes

Pumpkin Cream Cheese Muffins

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52 Comments

Servings: 12 muffins

50 mins

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My Pumpkin Cream Cheese Muffins are stuffed with a cream cheese filling and topped with my easy (no pastry cutter needed) streusel. They’re perfectly spiced and moist–such a fun fall breakfast treat! Recipe includes a how-to video!

two halves of a pumpkin cream cheese muffin stacked on top of each other to show their cheesecake centers

Cream Cheese-Stuffed Pumpkin Muffins

If you thought you loved my regular pumpkin muffins, just wait until you try this cream cheese-stuffed version! These pumpkin cream cheese muffins are perfected to be moist, not too sweet, and just the right amount of indulgent (although I’m 100% unopposed to eating sweets for breakfast; have you seen my pumpkin coffee cake?!). The very best part is what’s inside: a sweet, cheesecake-inspired surprise that you wouldn’t suspect from the outside.

The second-best part of this recipe is the streusel topping. Not only is it buttery, spiced, and sweet, but it’s also incredibly EASY, thanks to my favorite no-pastry cutter technique. You’ll never make streusel the old way again!

Why you’ll love my recipe:

  • Fast–takes less than an hour to make.
  • Has that bakery flavor and look you love (especially in my parchment paper liners).
  • Tastes like a pumpkin roll in muffin form…yum!
  • Uses my easy streusel, which means there’s no pastry cutter needed!

What You Need

overhead view of ingredients including butter, flour, cream cheese, pumpkin, and more

Here’s what you need to make these moist, cream cheese-stuffed pumpkin muffins:

  • Brown sugar. I recommend using either all light brown sugar or a mix of dark and light. Using all dark brown sugar will make your muffins too sweet/rich (and that’s coming from someone who used to think sugar cubes counted as a snack).
  • Butter. Use unsalted butter in the muffins (since we add salt ourselves) but you can use salted butter in the streusel since its such a small amount.
  • Pumpkin. Make sure you are using 100% pure pumpkin and NOT pumpkin pie filling!
  • Pumpkin pie spice. If you don’t have any on hand, give my homemade pumpkin spice a try.
  • Cream cheese. Brick-style, full-fat cream cheese is the only kind I recommend here.

SAM’S TIP: Because of the heavy cream cheese layer in the center, these muffins have a tendency to deflate a bit after baking. That’s not really a problem (unless you are some sort of muffin-top purist), but I do take a few measures to prevent this: making sure to add enough muffin batter over the top of the cream cheese filling to cover it entirely, and using a spoon to make sure the edges around the cream cheese are filled in as well.

Remember, this is just an overview of the ingredients I used and why. For the full recipe please scroll down to the bottom of the post!

How to Make Them

First, we’ll prepare our cheesecake filling and muffin batter:

  1. Combine cream cheese, sugar, and vanilla until smooth. Set aside.
  2. Cream together the butter and sugars, then add the eggs.
  3. Stir in the pumpkin and vanilla, then add the milk.
  4. Combine the dry ingredients in a separate bowl, then gradually fold them into the wet ingredients.
  5. Portion 2 tablespoons of muffin batter into cupcake liners and create a small divot in each muffin with a spoon.
  6. Top each muffin with 1 tablespoon of cheesecake filling, then top with more batter.
bowl full of homemade streusel to be added to muffins

Then we’ll preparing our streusel (it’s so easy!) and bake:

  1. Combine the flours, sugar, and cinnamon.
  2. Add the melted butter, then toss with a fork to create a clumpy mixture.
  3. Evenly distribute over muffins, pressing slightly into the tops as you go.
  4. Bake for 23-25 minutes and let cool in the pan for 10-12 minutes before removing to a cooling rack.

SAM’S TIP: I like a lot of streusel on my muffins, so much that my beloved apple muffins usually get complaints because the recipe makes so much streusel–but I use every bit of it! To appease those of you who are less streusel-friendly, I cut the recipe in half for these muffins, but if you’re a streusel fiend like me…you know what to do.

pumpkin cream cheese muffin that's been cut in half to show its cream cheese center

Frequently Asked Questions

How should pumpkin cream cheese muffins be stored?

You’ll want to store your muffins in an airtight container in the refrigerator where they will keep for 2-3 days.

Can I freeze these?

These pumpkin cream cheese muffins should hold up well in the freezer. Just make sure to wrap them really well and store in an airtight container.

Why are my muffins dry?

If your muffins are dry, it’s likely the batter was accidentally over-mixed. This is easy to do with quick breads, so make sure to switch to a spatula when you combine the wet and dry ingredients and stir until just combined. However, note that baking the muffins even a minute or two too long can also result in dense, dry muffins!

streusel topped muffin stuffed with cream cheese filling

I don’t know about you, but a hidden cheesecake filling might just be my favorite kind of surprise 😍. If you’re a fan, too, you’ll probably also enjoy my blueberry cream cheese muffins and my chocolate cheesecake muffins!

Enjoy!

Let’s bake together! I’ll be walking you through all the steps in my written recipe and video below! If you try this recipe, be sure to tag me on Instagram, and you can also find me on YouTube and Facebook

two halves of a pumpkin cream cheese muffin stacked on top of each other to show their cheesecake centers
4.98 from 38 votes

Pumpkin Cream Cheese Muffins

My seasonal pumpkin cream cheese muffins are flavored with real pumpkin and pumpkin spice, filled with a cheesecake surprise and topped off with a brown sugar streusel!  Recipe includes a how-to video!
Prep: 25 minutes
Cook: 25 minutes
Total: 50 minutes
Servings: 12 muffins
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Ingredients

Cream Cheese Filling

  • 8 ounces (225 g) cream cheese, softened to room temperature
  • cup (65 g) granulated sugar
  • ½ teaspoon vanilla extract

Pumpkin Muffins

  • ¾ cup (165 g) butter, softened
  • ½ cup (100 g) sugar
  • ¼ cup (50 g) brown sugar, packed
  • 2 large eggs, (room temperature preferred)
  • 1 cup (225 g) pumpkin puree
  • 1 ½ teaspoon vanilla extract
  • 2 Tablespoons (30 ml) whole milk
  • 1 ¼ cup (150 g) all-purpose flour
  • 2 teaspoons pumpkin spice
  • ½ teaspoon ground cinnamon
  • ¾ teaspoon baking powder
  • ¾ teaspoon baking soda
  • ½ teaspoon salt

Streusel

  • 1/2 cup (63 g) all-purpose flour
  • 1/3 cup (67 g) light brown sugar, firmly packed
  • 1 Tablespoon granulated sugar
  • 3/4 teaspoon ground cinnamon
  • 3 Tablespoons butter, (salted or unsalted is fine), melted

Instructions 

  • Preheat oven to 375F (190C) and line a 12 count muffin tin with paper liners.

Cream Cheese Filling

  • Place cream cheese in a mixing bowl and stir until smooth. Add granulated sugar and vanilla and stir until creamy and completely combined. Set aside.
    8 ounces (225 g) cream cheese, ⅓ cup (65 g) granulated sugar, ½ teaspoon vanilla extract

Muffins

  • In a medium-sized bowl, use an electric mixer to cream together softened butter and sugars until well-creamed.  
    ¾ cup (165 g) butter, ½ cup (100 g) sugar, ¼ cup (50 g) brown sugar
  • Add eggs and beat until combined.
    2 large eggs
  • Stir in pumpkin puree and vanilla extract until combined, then add milk and stir well. Be sure to scrape down the sides and bottom of the bowl to ensure that all ingredients are well combined.
    1 cup (225 g) pumpkin puree, 1 ½ teaspoon vanilla extract, 2 Tablespoons (30 ml) whole milk
  • In a separate, medium-sized bowl, whisk together flour, pumpkin spice, cinnamon, baking powder, baking soda, and salt.
    1 ¼ cup (150 g) all-purpose flour, 2 teaspoons pumpkin spice, ½ teaspoon ground cinnamon, ¾ teaspoon baking powder, ¾ teaspoon baking soda, ½ teaspoon salt
  • Using a spatula, gradually add dry ingredients and wet and stir until just combined — do not over-mix!
  • Portion about 2 tablespoons of pumpkin muffin batter into the bottom of each muffin liner. Use the back of a spoon to make a small crater/nest in the center of the batter.  
  • Drop a heaping tablespoon of cream cheese filling into the nests you've created then drop/smooth more pumpkin muffin batter overtop, taking care to completely cover the cream cheese and filling liners ¾ of the way full.

Streusel

  • Whisk together flour, sugars, and ground cinnamon until combined.
    1/2 cup (63 g) all-purpose flour, 1/3 cup (67 g) light brown sugar, 1 Tablespoon granulated sugar, 3/4 teaspoon ground cinnamon
  • Add melted butter and toss/claw together ingredients until clumpy.
    3 Tablespoons butter
  • Evenly divide streusel over pumpkin batter.
  • Transfer muffins to 375F (190C) preheated oven and bake for 23-25 minutes or until tops are beginning to turn golden brown and a toothpick inserted in the center comes out with dry pumpkin muffin crumbs. 
  • Allow to cool before serving.

Notes

Storing

Store leftovers in an airtight container in the refrigerator for up to 2 days.

Nutrition

Serving: 1muffin | Calories: 382kcal | Carbohydrates: 43g | Protein: 5g | Fat: 22g | Saturated Fat: 13g | Cholesterol: 94mg | Sodium: 372mg | Potassium: 147mg | Fiber: 1g | Sugar: 27g | Vitamin A: 3924IU | Vitamin C: 1mg | Calcium: 61mg | Iron: 2mg

Nutrition information is automatically calculated, so should only be used as an approximation.

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52 Comments

  1. Kristi says:

    I’ve made these muffins twice now and they are delicious and everyone loves them. Could you also make this in a pan like you would for brownies or a cake? If so what size pan would you recommend and how long would I cook them?

    1. Sam says:

      I’m so glad you enjoyed them so much, Kristi! I’m not sure how it would turn out in a sheet pan. You may have more luck with a loaf pan, but I haven’t tried it for sure so I can’t say for sure how it would turn out.

  2. Click here 4 dawn says:

    5 stars
    Great recipe, easy to follow with raving results.

    I made 9 large muffins and extended the baking time 5 minutes (but I believe my oven is off, so I would start with 3 minutes)

    Definitely will make again.

  3. Lani A says:

    5 stars
    To be honest, I’m not much of a baker; but I made these yesterday, and they turned out absolutely delicious. I’m going to make them again for a wider audience for Thanksgiving. Thanks for an easy recipe that even a novice like me could master!

    1. Sam says:

      I’m so glad you enjoyed them so much, Lani! 🙂

  4. Cecilia says:

    I made it double and they turned out amazing!! I was worried it would be too much and affect the muffin but they came out so moist, pumpkiny and scrumptious.

    Exactly 24 muffins. Had one while still warm, yummy mouthwatering.

    Your recipes never fail!

    1. Sam says:

      I’m so glad you enjoyed them so much, Cecilia! 🙂

  5. Meredith Ryan says:

    Can you freeze them ?

    1. Sam says:

      Hi Meredith! I haven’t tried it, but I don’t see any reason it wouldn’t work. 🙂

    2. Ginger Hackney says:

      These are very good but my filling “melted.” How do you keep it intact?? I chilled it prior to using & it still melted.

      1. Sam says:

        Hi Ginger! What do you mean by melted? It should be very creamy after baking and will spread inside the muffin.

  6. Linda Berger says:

    5 stars
    OMG..so delicious!!

    1. Sam says:

      I’m so glad you enjoyed, Linda! Thank you for trying my recipe, I appreciate it!

  7. Cookie says:

    Can you please provide baking times for muffins without streusel topping? Thanks so much!

    1. Sam says:

      Hi Cookie! I haven’t tried it, but I would just check them a minute or two earlier. 🙂

  8. Cheryol Gilson says:

    5 stars
    And these come together so beautifully and taste wonderful

  9. Miriam Rose Blanar says:

    5 stars
    I used to work at Starbucks and live for the day whenever the pumpkin cream cheese muffins came in stock. I loved them so much. But I no longer work there and can no longer get them for free and can’t bring myself to pay the ridiculous amount of money they cost. I finally decided to try your version and I can’t believe I waited this long to make them. They are insanely good. They are 100 times better than Starbucks. I love them so much! I love all things pumpkin and this recipe did not let me down. I know you’re not a huge fan of pumpkin so I must say, Thank you so much for making pumpkin recipes anyways.

    1. Emily @ Sugar Spun Run says:

      We’re so happy these muffins are able to satisfy that craving for you, Miriam! Thanks so much for your sweet review and five star rating–it means a lot to us 😊

  10. Liz says:

    These look amazing! Can’t wait to make them. What is the best way to keep these overnight?

    1. Sam says:

      Hi Liz! They keep well in an air tight container at room temperature. 🙂

    2. Julie says:

      5 stars
      Best pumpkin muffins ever!!!!
      Oh my gosh, these are Soo delicious!
      My 2 kids went nuts for them and loved everything about them. The cream cheese surprise inside and the streusel toppings made them winners. Will make again and again. Thank you for sharing this recipe!!

      1. Sam says:

        I’m so glad you enjoyed them so much, Julie! 🙂

  11. Mesha says:

    5 stars
    Absolutely amazing and delicious pumpkin muffins!

    1. Sam says:

      I am so glad you enjoyed them so much! 🙂

  12. Janette says:

    5 stars
    I am SO happy for pumpkin recipes and these muffins look delicious. Thank you for sharing!!

  13. Bri says:

    5 stars
    Literally the best muffins that I ever made, thank you for sharing this recipe!!!

  14. Sues says:

    These look seriously perfect!! I’m definitely halfway between summer and fall right now. I don’t want summer to go, but am still diving into pumpkin and other fall fun. This time of year makes me so happy!

  15. Shawnna Griffin says:

    hey girl- these muffins look so yummy!