• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
  • Home
  • Recipes
  • About Me
  • Contact
  • Subscribe
    • Facebook
    • Instagram
    • Pinterest
    • Twitter
    • Youtube
Sugar Spun Run
  • All Recipes
  • Desserts
    • Cookies
    • Candy
    • Bars & Brownies
    • Cake
    • Pies
  • Breads (Yeast & Quick Breads)
  • Savory
  • Breakfast
    • Muffins
    • Scones
  • Seasonal
    • Cozy Winter / Holiday Treats
    • Easter / Spring
    • Fall Recipes
    • Summer Recipes
  • Shop
menu icon
go to homepage
subscribe
search icon
Homepage link
  • Home
  • Recipe Index
  • About Me
  • Contact/Work with Me
  • Subscribe
    • Facebook
    • Instagram
    • Pinterest
    • Twitter
    • Youtube
  • ร—
    Home ยป Recipes ยป Fall Recipes

    Pumpkin Cream Cheese Muffins

    Updated: Oct 6, 2022 โ€ข Published: Oct 6, 2022 by Sam Merritt โ€ข 46 Comments

    This post may contain affiliate links. As an Amazon Associate I earn from qualifying purchases. Please read my disclosure policy.
    Jump to Recipe Jump to Video
    collage of pumpkin cream cheese muffns, top image of muffin cut open stacked, bottom image of cut open muffin on plate

    My Pumpkin Cream Cheese Muffins are stuffed with a cream cheese filling and topped with my easy (no pastry cutter needed) streusel. They’re perfectly spiced and moist–such a fun fall breakfast treat! Recipe includes a how-to video!

    two halves of a pumpkin cream cheese muffin stacked on top of each other to show their cheesecake centers

    Cream Cheese-Stuffed Pumpkin Muffins

    If you thought you loved my regular pumpkin muffins, just wait until you try this cream cheese-stuffed version! These pumpkin cream cheese muffins are perfected to be moist, not too sweet, and just the right amount of indulgent (although I’m 100% unopposed to eating sweets for breakfast; have you seen my pumpkin coffee cake?!). The very best part is what’s inside: a sweet, cheesecake-inspired surprise that you wouldn’t suspect from the outside.

    The second-best part of this recipe is the streusel topping. Not only is it buttery, spiced, and sweet, but it’s also incredibly EASY, thanks to my favorite no-pastry cutter technique. You’ll never make streusel the old way again!

    Why you’ll love my recipe:

    • Fast–takes less than an hour to make.
    • Has that bakery flavor and look you love (especially in my parchment paper liners).
    • Tastes like a pumpkin roll in muffin form…yum!
    • Uses my easy streusel, which means there’s no pastry cutter needed!

    What You Need

    overhead view of ingredients including butter, flour, cream cheese, pumpkin, and more

    Here’s what you need to make these moist, cream cheese-stuffed pumpkin muffins:

    • Brown sugar. I recommend using either all light brown sugar or a mix of dark and light. Using all dark brown sugar will make your muffins too sweet/rich (and that’s coming from someone who used to think sugar cubes counted as a snack).
    • Butter. Use unsalted butter in the muffins (since we add salt ourselves) but you can use salted butter in the streusel since its such a small amount.
    • Pumpkin. Make sure you are using 100% pure pumpkin and NOT pumpkin pie filling!
    • Pumpkin pie spice. If you don’t have any on hand, give my homemade pumpkin spice a try.
    • Cream cheese. Brick-style, full-fat cream cheese is the only kind I recommend here.

    SAM’S TIP: Because of the heavy cream cheese layer in the center, these muffins have a tendency to deflate a bit after baking. That’s not really a problem (unless you are some sort of muffin-top purist), but I do take a few measures to prevent this: making sure to add enough muffin batter over the top of the cream cheese filling to cover it entirely, and using a spoon to make sure the edges around the cream cheese are filled in as well.

    Remember, this is just an overview of the ingredients I used and why. For the full recipe please scroll down to the bottom of the post!

    How to Make Them

    spoon creating small divots in unbaked pumpkin muffins
    spoon adding a cheesecake filling to unbaked pumpkin muffins
    spoon smoothing pumpkin muffin batter into cupcake liners

    First, we’ll prepare our cheesecake filling and muffin batter:

    1. Combine cream cheese, sugar, and vanilla until smooth. Set aside.
    2. Cream together the butter and sugars, then add the eggs.
    3. Stir in the pumpkin and vanilla, then add the milk.
    4. Combine the dry ingredients in a separate bowl, then gradually fold them into the wet ingredients.
    5. Portion 2 tablespoons of muffin batter into cupcake liners and create a small divot in each muffin with a spoon.
    6. Top each muffin with 1 tablespoon of cheesecake filling, then top with more batter.
    bowl full of homemade streusel to be added to muffins

    Then we’ll preparing our streusel (it’s so easy!) and bake:

    1. Combine the flours, sugar, and cinnamon.
    2. Add the melted butter, then toss with a fork to create a clumpy mixture.
    3. Evenly distribute over muffins, pressing slightly into the tops as you go.
    4. Bake for 23-25 minutes and let cool in the pan for 10-12 minutes before removing to a cooling rack.

    SAM’S TIP: I like a lot of streusel on my muffins, so much that my beloved apple muffins usually get complaints because the recipe makes so much streusel–but I use every bit of it! To appease those of you who are less streusel-friendly, I cut the recipe in half for these muffins, but if you’re a streusel fiend like me…you know what to do.

    pumpkin cream cheese muffin that's been cut in half to show its cream cheese center

    Frequently Asked Questions

    How should pumpkin cream cheese muffins be stored?

    You’ll want to store your muffins in an airtight container in the refrigerator where they will keep for 2-3 days.

    Can I freeze these?

    These pumpkin cream cheese muffins should hold up well in the freezer. Just make sure to wrap them really well and store in an airtight container.

    Why are my muffins dry?

    If your muffins are dry, it’s likely the batter was accidentally over-mixed. This is easy to do with quick breads, so make sure to switch to a spatula when you combine the wet and dry ingredients and stir until just combined. However, note that baking the muffins even a minute or two too long can also result in dense, dry muffins!

    streusel topped muffin stuffed with cream cheese filling

    I don’t know about you, but a hidden cheesecake filling might just be my favorite kind of surprise 😍. If you’re a fan, too, you’ll probably also enjoy my blueberry cream cheese muffins and my chocolate cheesecake muffins!

    Enjoy!

    Let’s bake together! I’ll be walking you through all the steps in my written recipe and video below! If you try this recipe, be sure to tag me on Instagram, and you can also find me on YouTube and Facebook

    two halves of a pumpkin cream cheese muffin stacked on top of each other to show their cheesecake centers

    Pumpkin Cream Cheese Muffins

    My seasonal pumpkin cream cheese muffins are flavored with real pumpkin and pumpkin spice, filled with a cheesecake surprise and topped off with a brown sugar streusel!  Recipe includes a how-to video!
    4.98 from 36 votes
    Print Pin Rate
    Prevent your screen from going dark
    Course: Dessert
    Cuisine: American
    Prep Time: 25 minutes minutes
    Cook Time: 25 minutes minutes
    Total Time: 50 minutes minutes
    Servings: 12 muffins
    Calories: 382kcal
    Author: Sam Merritt

    Ingredients

    Cream Cheese Filling

    • 8 ounces (225 g) cream cheese softened to room temperature
    • ⅓ cup (65 g) granulated sugar
    • ½ teaspoon vanilla extract

    Pumpkin Muffins

    • ¾ cup (165 g) butter softened
    • ½ cup (100 g) sugar
    • ¼ cup (50 g) brown sugar packed
    • 2 large eggs (room temperature preferred)
    • 1 cup (225 g) pumpkin puree
    • 1 ½ teaspoon vanilla extract
    • 2 Tablespoons (30 ml) whole milk
    • 1 ¼ cup (150 g) all-purpose flour
    • 2 teaspoons pumpkin spice
    • ½ teaspoon ground cinnamon
    • ¾ teaspoon baking powder
    • ¾ teaspoon baking soda
    • ½ teaspoon salt

    Streusel

    • ยฝ cup (63 g) all-purpose flour
    • โ…“ cup (67 g) light brown sugar firmly packed
    • 1 Tablespoon granulated sugar
    • ยพ teaspoon ground cinnamon
    • 3 Tablespoons butter (salted or unsalted is fine), melted

    Recommended Equipment

    • Muffin tin
    • Mixing bowls

    Instructions

    • Preheat oven to 375F (190C) and line a 12 count muffin tin with paper liners.

    Cream Cheese Filling

    • Place cream cheese in a mixing bowl and stir until smooth. Add granulated sugar and vanilla and stir until creamy and completely combined. Set aside.
      8 ounces (225 g) cream cheese, ⅓ cup (65 g) granulated sugar, ½ teaspoon vanilla extract

    Muffins

    • In a medium-sized bowl, use an electric mixer to cream together softened butter and sugars until well-creamed.  
      ¾ cup (165 g) butter, ½ cup (100 g) sugar, ¼ cup (50 g) brown sugar
    • Add eggs and beat until combined.
      2 large eggs
    • Stir in pumpkin puree and vanilla extract until combined, then add milk and stir well. Be sure to scrape down the sides and bottom of the bowl to ensure that all ingredients are well combined.
      1 cup (225 g) pumpkin puree, 1 ½ teaspoon vanilla extract, 2 Tablespoons (30 ml) whole milk
    • In a separate, medium-sized bowl, whisk together flour, pumpkin spice, cinnamon, baking powder, baking soda, and salt.
      1 ¼ cup (150 g) all-purpose flour, 2 teaspoons pumpkin spice, ½ teaspoon ground cinnamon, ¾ teaspoon baking powder, ¾ teaspoon baking soda, ½ teaspoon salt
    • Using a spatula, gradually add dry ingredients and wet and stir until just combined — do not over-mix!
    • Portion about 2 tablespoons of pumpkin muffin batter into the bottom of each muffin liner. Use the back of a spoon to make a small crater/nest in the center of the batter.  
    • Drop a heaping tablespoon of cream cheese filling into the nests you've created then drop/smooth more pumpkin muffin batter overtop, taking care to completely cover the cream cheese and filling liners ¾ of the way full.

    Streusel

    • Whisk together flour, sugars, and ground cinnamon until combined.
      ยฝ cup (63 g) all-purpose flour, โ…“ cup (67 g) light brown sugar, 1 Tablespoon granulated sugar, ยพ teaspoon ground cinnamon
    • Add melted butter and toss/claw together ingredients until clumpy.
      3 Tablespoons butter
    • Evenly divide streusel over pumpkin batter.
    • Transfer muffins to 375F (190C) preheated oven and bake for 23-25 minutes or until tops are beginning to turn golden brown and a toothpick inserted in the center comes out with dry pumpkin muffin crumbs. 
    • Allow to cool before serving.

    Notes

    Storing

    Store leftovers in an airtight container in the refrigerator for up to 2 days.

    Nutrition

    Serving: 1muffin | Calories: 382kcal | Carbohydrates: 43g | Protein: 5g | Fat: 22g | Saturated Fat: 13g | Cholesterol: 94mg | Sodium: 372mg | Potassium: 147mg | Fiber: 1g | Sugar: 27g | Vitamin A: 3924IU | Vitamin C: 1mg | Calcium: 61mg | Iron: 2mg

    Nutritional information is based on third-party calculations and should be considered an estimate only. Actual nutritional content will vary based upon brands used, measuring methods, cooking method, portion sizes, and more.

    Tried this recipe? Show me on Instagram!Mention @SugarSpun_Sam or tag #sugarspunrun!

    Related Recipes

    • fork piercing a cut section from a stack of thick and fluffy pumpkin pancakes
      Pumpkin Pancakes
    • Pumpkin scone with icing drizzle
      Pumpkin Scones
    • pumpkin bread on cooling rack
      Pumpkin Bread
    • Glazed pumpkin spiced donuts
      Baked Pumpkin Donuts

    More Fall Recipes

    • Overhead view of a plate of maple brown sugar cookies.
      Maple Brown Sugar Cookies
    • Collage of Thanksgiving Desserts that aren't pie, top images of apple pie cookies, pumpkin cheesecake bars, bottom images of spice cake, candied pecans and apple pie cheesecake
      Thanksgiving Desserts (that aren’t pie!)
    • Collage of Halloween Dessert Ideas, top images spider cookies and dessert cups, bottom brownie bites, pumpkin cookies, pumpkin seeds
      25 Spooky-Cute Halloween Desserts
    • Close up of apple pancakes on a plate, syrup being poured overtop
      Apple Pancakes

    Reader Interactions

    Comments

    1. Kristi

      November 26, 2023 at 1:02 pm

      Iโ€™ve made these muffins twice now and they are delicious and everyone loves them. Could you also make this in a pan like you would for brownies or a cake? If so what size pan would you recommend and how long would I cook them?

      Reply
      • Sam

        November 26, 2023 at 8:47 pm

        I’m so glad you enjoyed them so much, Kristi! I’m not sure how it would turn out in a sheet pan. You may have more luck with a loaf pan, but I haven’t tried it for sure so I can’t say for sure how it would turn out.

        Reply
    2. Click here 4 dawn

      November 22, 2023 at 8:24 am

      5 stars
      Great recipe, easy to follow with raving results.

      I made 9 large muffins and extended the baking time 5 minutes (but I believe my oven is off, so I would start with 3 minutes)

      Definitely will make again.

      Reply
    3. Lani A

      October 10, 2023 at 11:25 pm

      5 stars
      To be honest, Iโ€™m not much of a baker; but I made these yesterday, and they turned out absolutely delicious. Iโ€™m going to make them again for a wider audience for Thanksgiving. Thanks for an easy recipe that even a novice like me could master!

      Reply
      • Sam

        October 11, 2023 at 12:15 pm

        I’m so glad you enjoyed them so much, Lani! ๐Ÿ™‚

        Reply
    4. Cecilia

      October 08, 2023 at 10:13 pm

      I made it double and they turned out amazing!! I was worried it would be too much and affect the muffin but they came out so moist, pumpkiny and scrumptious.

      Exactly 24 muffins. Had one while still warm, yummy mouthwatering.

      Your recipes never fail!

      Reply
      • Sam

        October 09, 2023 at 8:35 pm

        I’m so glad you enjoyed them so much, Cecilia! ๐Ÿ™‚

        Reply
    5. Meredith Ryan

      September 28, 2023 at 9:41 pm

      Can you freeze them ?

      Reply
      • Sam

        September 29, 2023 at 8:27 pm

        Hi Meredith! I haven’t tried it, but I don’t see any reason it wouldn’t work. ๐Ÿ™‚

        Reply
      • Ginger Hackney

        October 03, 2023 at 4:18 pm

        These are very good but my filling โ€œmelted.โ€ How do you keep it intact?? I chilled it prior to using & it still melted.

        Reply
        • Sam

          October 04, 2023 at 9:24 am

          Hi Ginger! What do you mean by melted? It should be very creamy after baking and will spread inside the muffin.

    6. Linda Berger

      September 24, 2023 at 11:50 pm

      5 stars
      OMG..so delicious!!

      Reply
      • Sam

        September 25, 2023 at 4:53 pm

        I’m so glad you enjoyed, Linda! Thank you for trying my recipe, I appreciate it!

        Reply
    7. Cookie

      August 23, 2023 at 3:03 am

      Can you please provide baking times for muffins without streusel topping? Thanks so much!

      Reply
      • Sam

        August 24, 2023 at 10:06 pm

        Hi Cookie! I haven’t tried it, but I would just check them a minute or two earlier. ๐Ÿ™‚

        Reply
    8. Cheryol Gilson

      November 15, 2022 at 8:28 pm

      5 stars
      And these come together so beautifully and taste wonderful

      Reply
    9. Miriam Rose Blanar

      January 03, 2022 at 8:49 pm

      5 stars
      I used to work at Starbucks and live for the day whenever the pumpkin cream cheese muffins came in stock. I loved them so much. But I no longer work there and can no longer get them for free and can’t bring myself to pay the ridiculous amount of money they cost. I finally decided to try your version and I can’t believe I waited this long to make them. They are insanely good. They are 100 times better than Starbucks. I love them so much! I love all things pumpkin and this recipe did not let me down. I know you’re not a huge fan of pumpkin so I must say, Thank you so much for making pumpkin recipes anyways.

      Reply
      • Emily @ Sugar Spun Run

        January 17, 2022 at 2:48 pm

        We’re so happy these muffins are able to satisfy that craving for you, Miriam! Thanks so much for your sweet review and five star rating–it means a lot to us ๐Ÿ˜Š

        Reply
    10. Liz

      November 03, 2020 at 3:06 pm

      These look amazing! Canโ€™t wait to make them. What is the best way to keep these overnight?

      Reply
      • Sam

        November 03, 2020 at 10:05 pm

        Hi Liz! They keep well in an air tight container at room temperature. ๐Ÿ™‚

        Reply
      • Julie

        March 07, 2023 at 2:19 am

        5 stars
        Best pumpkin muffins ever!!!!
        Oh my gosh, these are Soo delicious!
        My 2 kids went nuts for them and loved everything about them. The cream cheese surprise inside and the streusel toppings made them winners. Will make again and again. Thank you for sharing this recipe!!

        Reply
        • Sam

          March 07, 2023 at 9:44 am

          I’m so glad you enjoyed them so much, Julie! ๐Ÿ™‚

    11. Mesha

      September 05, 2020 at 12:44 pm

      5 stars
      Absolutely amazing and delicious pumpkin muffins!

      Reply
      • Sam

        September 05, 2020 at 9:27 pm

        I am so glad you enjoyed them so much! ๐Ÿ™‚

        Reply
    12. Janette

      September 19, 2017 at 2:15 pm

      5 stars
      I am SO happy for pumpkin recipes and these muffins look delicious. Thank you for sharing!!

      Reply
    13. Bri

      September 10, 2017 at 9:49 am

      5 stars
      Literally the best muffins that I ever made, thank you for sharing this recipe!!!

      Reply
    14. Sues

      September 06, 2017 at 9:31 am

      These look seriously perfect!! I’m definitely halfway between summer and fall right now. I don’t want summer to go, but am still diving into pumpkin and other fall fun. This time of year makes me so happy!

      Reply
    15. Shawnna Griffin

      September 05, 2017 at 7:20 pm

      hey girl- these muffins look so yummy!

      Reply
    Newer Comments »
    4.98 from 36 votes (20 ratings without comment)

    Leave a Reply Cancel reply

    Your email address will not be published. Required fields are marked *

    Recipe Rating




    Primary Sidebar

    The author (Sam) in blue shirt holding donut Hi, I'm Sam! I'm dedicated to bringing you sweet, simple, and from-scratch dessert recipes. My life may or may not be controlled by my sweet tooth. Send help (or chocolate). Read more about me.

    Warm Weather Recipes

    Square slice of zucchini cake topped with cream cheese frosting with one forkful sitting beside the slice.

    Zucchini Cake

    Overhead view of a bowl of peach crisp topped with vanilla ice cream.

    Peach Crisp Recipe

    Mason jar of homemade raspberry sauce topped with fresh raspberries.

    Raspberry Sauce

    Overhead view of a serving bowl of cucumber salad made with dill and red onion.

    Cucumber Salad

    large glass pitcher of homemade strawberry lemonade with sliced strawberries and lemons as a garnish

    Strawberry Lemonade

    lemon cake on white plate

    Lemon Cake

    More Spring Recipes

    Most Popular

    flaky biscuit on white cloth

    Easy Homemade Biscuits

    Pizza dough in glass bowl, after rising

    The Best Pizza Dough Recipe

    Slice of cheesecake

    The Best Cheesecake Recipe

    Potato soup in bowl, with toppings

    The Ultimate Creamy Potato Soup

    one bite missing from a slice of vanilla cake with chocolate frosting

    The Best Vanilla Cake Recipe

    Stack of cookies made from this chocolate chip cookie recipe with melty chocolate chips and a bite missing from the top cookie

    The WORST Chocolate Chip Cookie Recipe

    places sugar spun run has been featured (Women's Day, Redbook, Good Housekeeping, Country Living, the huffington post, People, Delish, MSN, TLC, Parade, Better Homes & Gardens, Buzzfeed)
    • Facebook
    • Instagram
    • Pinterest
    • Twitter
    • Youtube

    Privacy Policy

    Footer

    โ†‘ back to top

    ABOUT

    • About Me
    • Policies, Disclosure & Privacy
    • Terms of Use

    CONTACT

    • Contact
    • Work with Me!

    ยฉ 2020 Sugar Spun Run. All Rights Reserved

    Rate This Recipe

    Your vote:




    A rating is required
    A name is required
    An email is required

    Recipe Ratings without Comment

    Something went wrong. Please try again.